Installing ccp4-6.1.2 from source on Ubuntu Linux

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hari@charlie:/rawdata12/ccp4-6.1.2$ tar -xvf CCP4-Oth.tar README install.sh manifest.sh ccp4-6.1.2-core-src.tar.gz phaser-2.1.4-cctbx-src.tar.gz chooch.tar.gz BalbesDB.tar.gz tcltkplusplus.tar.gz Python.tar.gz clustalw.tar.gz fasta.tar.gz graphviz.tar.gz hari@charlie:/rawdata12/ccp4-6.1.2$ more README CCP4 6.1 Release ================ The CCP4 download pages will generate a tar file customised to your platform and choice of packages. Un-tar this file with tar xvf <tar-file> You will get these 3 files: README ...this file install.sh ...a shell script for installation manifest.sh ...contains details of packages chosen and depending on your choice of packages, one or more of: packages.tar.gz ...containing CCP4 packages (if chosen) tools.tar.gz ...containing external tools (if chosen) ccp4mg-*.tar.gz ...containing CCP4mg (if chosen) The script install.sh will build and/or install automatically all packages you have downloaded. Automation is achieved by making some assumptions and decisions. If you find problems, or wish to do something "non-standard", then the traditional build is still available - see "Manual installation" below. Automated installation ====================== Run the install.sh script. You may be asked: "We have detected an existing installation at /xtal/ccp4 Would you like to use install there? (yes/no):" Answer "yes" to update your existing installation (for example, when updating individual packages), or "no" to create a fresh CCP4 installation. You will then be asked: "Do you want to keep all default parameters for installation (yes/no):" If you answer "yes" (the default) then the packages will be built (if necessary) and installed in subdirectories of the current working directory, with different subdirectories for CCP4, ccp4mg, Coot and Chooch. Note that some packages are amalgamated, e.g. Phaser exists within the CCP4 subdirectory. For each package, the stdout is redirected to a file <package>.log while the stderr is redirected to a file <package>e.log The script will also generate a "setup-scripts" subdirectory that contains set-up files for the various packages and for different shells, e.g. "setup-scripts/sh/ccp4.setup". You should be able to source these set-up files, and go. All these set-up files are specific to the directory where the packages were installed: if you later move the packages to a different location, you will need to manually edit the set-up files. If you answer "no" to keeping the default parameters, then you will be ask a series of questions to fine-tune the installation, including where to install the various components and various configure options. Manual installation =================== If you don't want to use the install.sh script, then you can manually unzip and untar the file packages.tar.gz (and tools.tar.gz if relevant). This will unpack the packages into subdirectories (as above). You can then build and/or install each package in the traditional way. Manual installation will be necessary if you want to build a package with options not covered by the automated installation. In general, the packages can be built in any order. However, some of the builds require python, so if you do not yet have python, you should build it first. Some details on packages included ================================= * Phaser/cctbx executables

For most systems, this includes solely the phaser executable, for hari@charlie:/rawdata12/ccp4-6.1.2$ ./install.sh ############################# # INSTALLER FOR CCP4 v6.1.2 # ############################# Installing the following packages: CCP4 source code PHASER/CCTBX source code BALBES database CHOOCH source code Tcl/Tk/++ source code Python source code ClustalW source code Fasta source code GraphViz source code We have detected an existing installation at /home/hari Would you like to use install there? (yes/no): Currently [yes] yes Do you want to keep all default parameters for installation (yes/no): Currently [yes] NB: By default, the crystallographic packages will be extracted and built here. Copying ccp4 archive to installation directory ... Copying balbes database archive to installation directory ... Copying chooch archive to installation directory ... Copying python archive to installation directory ... Copying tcl/tk/blt/incrTcl archive to installation directory ... Copying clustalw2 archive to installation directory ... Copying fasta archive to installation directory ... Copying graphviz archive to installation directory ... We are now ready to install : CCP4 source code PHASER/CCTBX source code BALBES database CHOOCH source code Tcl/Tk++ source code Python source code ClustalW source code Fasta source code GraphViz source code NB: The remaining usually does not require your intervention. If it is your first installation of CCP4 you might be prompted to agree licence first. The installation will take some time, so you'd better grab a cup of coffee and relax. Press any key to start. unpacking ccp4 core source... unpacking phaser/cctbx source... unpacking balbes database... unpacking chooch source... ####################### # PYTHON Installation # ####################### Configuring Python 2.4.5 installation... Building Python 2.4.5... Installing Python 2.4.5... ######################### # TclTk++ Installation # ######################### Compiling and installing Tcl-Tk++ ... ######################### # ClustalW Installation # ######################### Configuring clustalw 2.0.9 installation ... Compiling clustalw 2.0.9 ... Installing clustalw 2.0.9 ... ###################### # Fasta Installation # ###################### Compiling and installing fasta 35.4.1 ... ######################### # GraphViz Installation # ######################### Configuring graphviz 2.20.2 installation ... Compiling graphviz 2.20.2 ... Installing graphviz 2.20.2 ... ####################### # CHOOCH Installation # ####################### Chooch will be installed in /home/hari/ccp4-6.1.2/ Chooch support libraries will be installed in /home/hari/chooch Configuring gsl 1.4 installation... Building gsl 1.4... Installing gsl 1.4... Configuring cgraph installation... Building cgraph 2.04... Installing cgraph 2.04... Configuring Chooch installation... Building chooch ... Installing chooch ... ###################### # CCP4 Installation # ###################### Creating ccp4.setup file... Configuring CCP4 installation... Building CCP4 (this can take from couple of hours to several hours depending on your system ).. Installing CCP4... The installation of CCP4 is now completed Configuration files has been copied in /home/hari/setup-scripts/ To setup CCP4 environment, source the file setup-scripts/<yourshell>/ccp4.setup To be able to use other CCP4 software or tools from anywhere, source the file setup-scripts/<yourshell>/ccp4-others.setup Thank you for using CCP4 packages. Do you want to have your environment set up through your terminal resource file, so each time you open a terminal it is ready to go (y/n): Currently [y]

Installing ccp4-6.1.2 from source on Ubuntu Linux

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